In freshwater or estuarine systems close to land, nitrate can reach high levels that can potentially cause the death of fish. While nitrate is much less toxic than ammonia or nitrite, levels over 30 ppm of nitrate can inhibit growth, impair the immune system and cause stress in some aquatic species. However, in light of inherent problems with past protocols on acute nitrate toxicity experiments, the extent of nitrate toxicity has been the subject of recent debate.

In most cases of excess nitrate concentrations in aquatic systems, the primary source is surface runoff from agricultural or landscaped areas which have received excess nitrate fertilizer. These levels of nitrate can also lead to algae blooms, and when nutrients become limiting (such as potassium, phosphate or nitrate) then eutrophication can occur. As well as leading to water anoxia, these blooms may cause other changes to ecosystem function, favouring some groups of organisms over others. Consequently, as nitrates form a component of total dissolved solids, they are widely used as an indicator of water quality.

Nitrates are also a by-product of septic systems. Specifically, they are a naturally occurring chemical that is left after the break down or decomposition of animal or human waste. Water quality may also be affected through ground water resources that have a high number of septic systems in a watershed. Septics leach down into ground water resources or aquifers and supply near by bodies of water. Lakes that rely on ground water are often affected by nitrification through this process.

Turbidity is the cloudiness or haziness of a fluid caused by individual particles (suspended solids) that are generally invisible to the naked eye, similar to smoke in air. The measurement of turbidity is a key test of water quality.

Fluids can contain suspended solid matter consisting of particles of many different sizes. While some suspended material will be large enough and heavy enough to settle rapidly to the bottom of the container if a liquid sample is left to stand (the settleable solids), very small particles will settle only very slowly or not at all if the sample is regularly agitated or the particles are colloidal. These small solid particles cause the liquid to appear turbid.

Sediment is any particulate matter that can be transported by fluid flow, and which eventually is deposited.

Sediments are most often transported by water (fluvial processes) transported by wind (aeolian processes) and glaciers. Beach sands and river channel deposits are examples of fluvial transport and deposition, though sediment also often settles out of slow-moving or standing water in lakes and oceans. Desert sand dunes and loess are examples of aeolian transport and deposition. Glacial moraine deposits and till are ice transported sediments.

One cause of high sediment loads from slash and burn and shifting cultivation of tropical forests. When the ground surface is stripped of vegetation and then seared of all living organisms, the upper soils are vulnerable to both wind and water erosion. In a number of regions of the earth, entire sectors of a country have become erodible. For example, on the Madagascar high central plateau, which constitutes approximately ten percent of that country's land area, most of the land area is devegetated, and gullies have eroded into the underlying soil in furrows typically in excess of 50 meters deep and one kilometer wide. This results in discoloration of rivers to a dark red brown color and leads to fish kills.

Erosion is also an issue in areas of modern farming, where the removal of native vegetation for the cultivation and harvesting of a single type of crop has left the soil unsupported. Many of these regions are near rivers and drainages. Loss of soil due to erosion removes useful farmland, adds to sediment loads, and can help transport anthropogenic fertilizers into the river system, which leads to eutrophication.

Oxygen saturation or Dissolved oxygen (or DO) is a relative measure of the amount of oxygen that is dissolved or carried in a given medium. It can be measured with a dissolved oxygen probe such as an oxygen sensor or an optode in liquid media, usually water. In aquatic environments, oxygen saturation is a relative measure of the amount of oxygen (O2) dissolved in the water. Most of dissolved oxygen in water comes from the atmosphere.

Most life forms need oxygen for respiration including fish, land animals, plants, and aerobic bacteria. However, in an aquatic environment, supersaturation can sometimes be harmful for organisms and cause decompression sickness.

Total Dissolved Solids (often abbreviated TDS) is an expression for the combined content of all inorganic and organic substances contained in a liquid which are present in a molecular, ionized or micro-granular (colloidal sol) suspended form. Generally the operational definition is that the solids must be small enough to survive filtration through a sieve size of two micrometres. Total dissolved solids are normally only discussed for freshwater systems, since salinity comprises some of the ions constituting the definition of TDS. The principal application of TDS is in the study of water quality for streams, rivers and lakes, although TDS is generally considered not as a primary pollutant (e.g. it is not deemed to be associated with health effects), but it is rather used as an indication of aesthetic characteristics of drinking water and as an aggregate indicator of presence of a broad array of chemical contaminants.

For high quality drinking water the typical value range is 0.0005 to 0.05 (siemens per metre).

For more information (background, pictures, experiments and references): Water Pollution

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